MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-21-P3

Family name MIR-21 (all species)
Seed AGCUUAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-21-P4 
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Xtr-Mir-21 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 89413260-89413319 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCUCCAUGGCUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUGUCAUGGCAACAACAGUCGGUAGGCUGUCUGACAUUUUGGUGUCUUUCACGUGACCAAC
Get precursor sequence
Structure
        10          20        30        40        50        60
ACAUCUCCAUGGCUGUA--|  UCC                A     A     A  GUUGG 
                   CCA   UGUCGGAUAGCUUAUC GACUG UGUUG CU     A
                   GGU   ACAGUCUGUCGGAUGG CUGAC ACAAC GG     U
CAACCAGUGCACUUUCUGU^  UUU                -     A     -  UACUG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-21-P3_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGAUGUUGACU -24
Get sequence
Star sequence

Xla-Mir-21-P3_3p*
mirBase accessionNone
Sequence 
38- CAACAACAGUCGGUAGGCUGUC -60
Get sequence