MirGeneDB ID | Cpo-Mir-21 |
Family name |
MIR-21 (all species) |
Seed |
AGCUUAU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-21
|
Paralogues |
|
Orthologues |
Aca-Mir-21
Ami-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cja-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpi-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Eca-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Laf-Mir-21
Lch-Mir-21
Loc-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mdo-Mir-21
Mml-Mir-21
Mmr-Mir-21
Mmu-Mir-21
Mun-Mir-21
Neu-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pab-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Sha-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (cavPor3) |
scaffold_32: 7682937-7682996 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
ACAUCUCCAUGGCUGUACCACCUUGUCGGGUAGCUUAUCAGACUGAUGUUGACUGUUGAAUCUCAUGGCAACAGCAGUCGAUGGGCUGUCUGACAUUCUGGUAUCUUUCAUCUGACCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCUCCAUGGCUGUA--| CCU GU A A A GUUGA
CCA UGUCGG AGCUUAUC GACUG UGUUG CU A
GGU ACAGUC UCGGGUAG CUGAC ACAAC GG U
CUACCAGUCUACUUUCUAU^ CUU UG - G - UACUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-21_5p |
mirBase accession | MIMAT0046872 |
Sequence |
0- UAGCUUAUCAGACUGAUGUUGACU -24
Get sequence
|
Star sequence |
Cpo-Mir-21_3p* |
mirBase accession | MIMAT0046873 |
Sequence |
38- CAACAGCAGUCGAUGGGCUGUC -60
Get sequence
|