MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-21-P1

Family name MIR-21 (all species)
Seed AGCUUAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-21-2
Paralogues Gmo-Mir-21-P2 
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Xtr-Mir-21 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig348441: 888-947 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUGUCUCUCACUCUCUCGGCCUGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUAGAUUGCAAGGCGACAACAGUCUGUAGGCUGUCUGACAUUUUGAGCUCUUUCAUCUCGAACCA
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Structure
        10          20        30        40        50          
CUGUGUCUCUCACUCUC--|   CC              U       G     G UGUUAG 
                   UCGG  UGUCAGAUAGCUUA CAGACUG UGUUG C      \
                   AGUU  ACAGUCUGUCGGAU GUCUGAC ACAGC G      A
ACCAAGCUCUACUUUCUCG^   UU              -       A     G AACGUU 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-21-P1_5p
mirBase accessionMIMAT0044033
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
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Star sequence

Gmo-Mir-21-P1_3p*
mirBase accessionMIMAT0044034
Sequence 
38- CGACAACAGUCUGUAGGCUGUC -60
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