Mir-21-P1

MirGeneDB ID

Dre-Mir-21-P1

Family name

MIR-21 (all species)

Seed

AGCUUAU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-21-1

Paralogues

Dre-Mir-21-P2

Orthologues

Aca-Mir-21 Ami-Mir-21 Bta-Mir-21 Cfa-Mir-21 Cja-Mir-21 Cli-Mir-21 Cmi-Mir-21 Cpi-Mir-21 Cpo-Mir-21 Dno-Mir-21 Ebu-Mir-21 Eca-Mir-21 Ete-Mir-21 Gga-Mir-21 Gja-Mir-21 Gmo-Mir-21-P1 Hsa-Mir-21 Laf-Mir-21 Lch-Mir-21 Loc-Mir-21 Mal-Mir-21-P1 Mdo-Mir-21 Mml-Mir-21 Mmr-Mir-21 Mmu-Mir-21 Mun-Mir-21 Neu-Mir-21 Oan-Mir-21 Ocu-Mir-21 Pab-Mir-21 Pbv-Mir-21 Pma-Mir-21 Rno-Mir-21 Sha-Mir-21 Spt-Mir-21 Sto-Mir-21 Tgu-Mir-21 Tni-Mir-21-P1 Xtr-Mir-21

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr10: 28198933-28198993 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAUAUAAGUCUUUCCCAGUGUGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUACAUUCGCCCGGCGACAACAGUCUGUAGGCUGUCUGACAUUUUGGGCAUUUUCUUCUCCGAUUA

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Structure

        10          20        30        40        50        60 
GUGGAUAUAAGUCUUUC--|   U               U       G     G UGUUACA 
                   CCAG GUGUCAGAUAGCUUA CAGACUG UGUUG C       \
                   GGUU UACAGUCUGUCGGAU GUCUGAC ACAGC G       U
AUUAGCCUCUUCUUUUACG^   U               -       A     - GCCCGCU 
 .       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-21-P1_5p

mirBase accession

MIMAT0001787

Sequence

0- UAGCUUAUCAGACUGGUGUUGGC -23

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Proposed targets

TargetScanFish: dre-miR-21

Star sequence

Dre-Mir-21-P1_3p*

mirBase accession

None

Sequence

39- CGACAACAGUCUGUAGGCUGUC -61

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