MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-21

Family name MIR-21 (all species)
Seed AGCUUAU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cli-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmu-Mir-21  Mun-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636009.1: 435444-435503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCUUCUCCAUCACUGCCAUUCUGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUAGCUCAGGUGGCGACAACAGUUGGUAGGCUAUCUGGCGACAUGGCACCUUCCAUCAGAUCAAC
Get precursor sequence
Structure
        10          20        30        40        50        60
CAGCUUCUCCAUCACUG--|   UC                  A   G     G UGUUAG 
                   CCAU  UGUCAGAUAGCUUAUCAG CUG UGUUG C      C
                   GGUA  GCGGUCUAUCGGAUGGUU GAC ACAGC G      U
CAACUAGACUACCUUCCAC^   CA                  -   A     - GUGGAC 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-21_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
Get sequence
Star sequence

Cmi-Mir-21_3p*
mirBase accessionNone
Sequence 
38- CGACAACAGUUGGUAGGCUAUC -60
Get sequence