MirGeneDB ID | Sha-Mir-21 |
Family name |
MIR-21 (all species) |
Seed |
AGCUUAU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
sha-mir-21
|
Paralogues |
|
Orthologues |
Aca-Mir-21
Ami-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cja-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpi-Mir-21
Cpo-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Eca-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Laf-Mir-21
Lch-Mir-21
Loc-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mdo-Mir-21
Mml-Mir-21
Mmr-Mir-21
Mmu-Mir-21
Mun-Mir-21
Neu-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pab-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL856812.1: 2094220-2094279 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUCUCCAUGGCUGUACCGUCCUGUCAGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUCUCAUGGCAACAGCAGUCGAUGGGCUGUCUGACAUUUUGGUAUCUUUCAUCAGACCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCUCCAUGGCUGUA--| UCC A A A UGUUGG
CCG UGUCAGAUAGCUUAUC GACUG UGUUG C A
GGU ACAGUCUGUCGGGUAG CUGAC ACAAC G U
CUACCAGACUACUUUCUAU^ UUU - G - GUACUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-21_5p |
mirBase accession | None |
Sequence |
0- UAGCUUAUCAGACUGAUGUUGAC -23
Get sequence
|
Star sequence |
Sha-Mir-21_3p* |
mirBase accession | MIMAT0022813 |
Sequence |
38- CAACAGCAGUCGAUGGGCUGUC -60
Get sequence
|