| MirGeneDB ID | Lch-Mir-21 |
|---|---|
| Family name | MIR-21 (all species) |
| Seed | AGCUUAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-21 Ami-Mir-21 Bta-Mir-21 Cfa-Mir-21 Cja-Mir-21 Cli-Mir-21 Cmi-Mir-21 Cpi-Mir-21 Cpo-Mir-21 Dno-Mir-21 Dre-Mir-21-P1 Dre-Mir-21-P2 Ebu-Mir-21 Eca-Mir-21 Ete-Mir-21 Gga-Mir-21 Gja-Mir-21 Gmo-Mir-21-P1 Gmo-Mir-21-P2 Hsa-Mir-21 Laf-Mir-21 Loc-Mir-21 Mal-Mir-21-P1 Mal-Mir-21-P2 Mdo-Mir-21 Mml-Mir-21 Mmr-Mir-21 Mmu-Mir-21 Mun-Mir-21 Neu-Mir-21 Oan-Mir-21 Ocu-Mir-21 Pab-Mir-21 Pbv-Mir-21 Pma-Mir-21 Rno-Mir-21 Sha-Mir-21 Spt-Mir-21 Sto-Mir-21 Tgu-Mir-21 Tni-Mir-21-P1 Tni-Mir-21-P2 Xla-Mir-21-P3 Xla-Mir-21-P4 Xtr-Mir-21 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126567.1: 623470-623529 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | AUACUUCCAUUAUUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGGUGUUGGCUGUUAGAUCACAUGGCGACAACAGUCGGUAGGCUGUCUGACAUUUUGGUGUCUUUCAUCAGAGCUACGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUACUUCCAUUAUUGUA--| UCC A G G UGUUAG CCA UGUCGGAUAGCUUAUC GACUG UGUUG C A GGU ACAGUCUGUCGGAUGG CUGAC ACAGC G U CAUCGAGACUACUUUCUGU^ UUU - A - GUACAC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Lch-Mir-21_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCUUAUCAGACUGGUGUUGGC -23
Get sequence
|
| Star sequence | Lch-Mir-21_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CGACAACAGUCGGUAGGCUGUC -60
Get sequence
|
