MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-21

Family name MIR-21 (all species)
Seed AGCUUAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-21
Paralogues
Orthologues Aca-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Dre-Mir-21-P2  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Gmo-Mir-21-P2  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Tni-Mir-21-P1  Tni-Mir-21-P2  Xla-Mir-21-P3  Xla-Mir-21-P4  Xtr-Mir-21 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711418.1: 13769097-13769156 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACAUCUCCAUGGCUGUACCAUCCUGUCGGAUAGCUUAUCAGACUGAUGUUGACUGUUGGAUGUCAUGGCAACAACAGUCGGUAGGCUGUCUGACAUUUUGGUAUCUUUCAUCUGACCGUU
Get precursor sequence
Structure
        10          20        30        40        50        60
ACAUCUCCAUGGCUGUA--|  UCC                A     A     A UGUUGG 
                   CCA   UGUCGGAUAGCUUAUC GACUG UGUUG C      A
                   GGU   ACAGUCUGUCGGAUGG CUGAC ACAAC G      U
UUGCCAGUCUACUUUCUAU^  UUU                -     A     - GUACUG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-21_5p
mirBase accessionMIMAT0038056
Sequence 
0- UAGCUUAUCAGACUGAUGUUGAC -23
Get sequence
Star sequence

Ami-Mir-21_3p*
mirBase accessionMIMAT0038057
Sequence 
38- CAACAACAGUCGGUAGGCUGUC -60
Get sequence