MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-21-P2

Family name MIR-21 (all species)
Seed AGCUUAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-21-P1 
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P2  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P2  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P2  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Xtr-Mir-21 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 58489024-58489084 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCCCCCUCCAUCCUUCCACUCCGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUGGGUCGUCAUGGCAACAGCGGUCUGUAAGCUGUCUGAAGCGGUGGUCGUCGUCGUGGUAACGCA
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Structure
        10          20        30        40        50        60 
UCCCCCCCUCCAUCCUU--|    CCG            U       G     G UGUUGGG 
                   CCACU   UCAGAUAGCUUA CAGACUG UGUUG C       \
                   GGUGG   AGUCUGUCGAAU GUCUGGC ACAAC G       U
ACGCAAUGGUGCUGCUGCU^    CGA            -       G     - GUACUGC 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-21-P2_5p
mirBase accessionNone
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
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Star sequence

Tni-Mir-21-P2_3p*
mirBase accessionNone
Sequence 
39- CAACAGCGGUCUGUAAGCUGUC -61
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