MirGeneDB ID | Loc-Mir-21 |
Family name |
MIR-21 (all species) |
Seed |
AGCUUAU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-21
Ami-Mir-21
Bta-Mir-21
Cfa-Mir-21
Cja-Mir-21
Cli-Mir-21
Cmi-Mir-21
Cpi-Mir-21
Cpo-Mir-21
Dno-Mir-21
Dre-Mir-21-P1
Dre-Mir-21-P2
Ebu-Mir-21
Eca-Mir-21
Ete-Mir-21
Gga-Mir-21
Gja-Mir-21
Gmo-Mir-21-P1
Gmo-Mir-21-P2
Hsa-Mir-21
Laf-Mir-21
Lch-Mir-21
Mal-Mir-21-P1
Mal-Mir-21-P2
Mdo-Mir-21
Mml-Mir-21
Mmr-Mir-21
Mmu-Mir-21
Mun-Mir-21
Neu-Mir-21
Oan-Mir-21
Ocu-Mir-21
Pab-Mir-21
Pbv-Mir-21
Pma-Mir-21
Rno-Mir-21
Sha-Mir-21
Spt-Mir-21
Sto-Mir-21
Tgu-Mir-21
Tni-Mir-21-P1
Tni-Mir-21-P2
Xla-Mir-21-P3
Xla-Mir-21-P4
Xtr-Mir-21
|
Node of Origin (locus) |
Vertebrata
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Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG22: 4637220-4637279 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUAAUCCAUCACUCUACCAUCCUGUCAGAUAGCUUAUCAGACUGGUGUUGGCUGUUACAUCACAAGGCGACAACAGUCUGUAGGCUGUCUGACAUUUUGGGGUCUUUCAUCAGACCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUAAUCCAUCACUCUA--| UCC U G G UGUUAC
CCA UGUCAGAUAGCUUA CAGACUG UGUUG C \
GGU ACAGUCUGUCGGAU GUCUGAC ACAGC G A
CGACCAGACUACUUUCUGG^ UUU - A G AACACU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-21_5p |
mirBase accession | None |
Sequence |
0- UAGCUUAUCAGACUGGUGUUGGC -23
Get sequence
|
Star sequence |
Loc-Mir-21_3p* |
mirBase accession | None |
Sequence |
38- CGACAACAGUCUGUAGGCUGUC -60
Get sequence
|