MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-21-P1

Family name MIR-21 (all species)
Seed AGCUUAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-21
Paralogues Tni-Mir-21-P2 
Orthologues Aca-Mir-21  Ami-Mir-21  Bta-Mir-21  Cfa-Mir-21  Cja-Mir-21  Cli-Mir-21  Cmi-Mir-21  Cpi-Mir-21  Cpo-Mir-21  Dno-Mir-21  Dre-Mir-21-P1  Ebu-Mir-21  Eca-Mir-21  Ete-Mir-21  Gga-Mir-21  Gja-Mir-21  Gmo-Mir-21-P1  Hsa-Mir-21  Laf-Mir-21  Lch-Mir-21  Loc-Mir-21  Mal-Mir-21-P1  Mdo-Mir-21  Mml-Mir-21  Mmr-Mir-21  Mmu-Mir-21  Mun-Mir-21  Neu-Mir-21  Oan-Mir-21  Ocu-Mir-21  Pab-Mir-21  Pbv-Mir-21  Pma-Mir-21  Rno-Mir-21  Sha-Mir-21  Spt-Mir-21  Sto-Mir-21  Tgu-Mir-21  Xtr-Mir-21 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 7: 1044929-1044989 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUACAUCUGUCACUCUCGGCCUGUCAAAUAGCUUAUCAGACUGGUGUUGGCUGUUAAGAUUGCAAGGCGACAACAGUCUGAAGGCUGUCUGACAUUUCGGGCUCUUUCAUCUGACCAGC
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Structure
        10          20        30        40        50        60
CUUUACAUCUGUCACUC--|   CC     A       A        G     G UGUUAA 
                   UCGG  UGUCA AUAGCUU UCAGACUG UGUUG C      G
                   GGCU  ACAGU UGUCGGA AGUCUGAC ACAGC G      A
CGACCAGUCUACUUUCUCG^   UU     C       -        A     G AACGUU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-21-P1_5p
mirBase accessionMIMAT0003000
Sequence 
0- UAGCUUAUCAGACUGGUGUUGGC -23
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Star sequence

Tni-Mir-21-P1_3p* (predicted)
mirBase accessionNone
Sequence 
39- CGACAACAGUCUGAAGGCUGUC -61
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