Mir-21-P1

MirGeneDB ID

Mal-Mir-21-P1

Family name

MIR-21 (all species)

Seed

AGCUUAU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-21-P2

Orthologues

Aca-Mir-21 Ami-Mir-21 Bta-Mir-21 Cfa-Mir-21 Cja-Mir-21 Cli-Mir-21 Cmi-Mir-21 Cpi-Mir-21 Cpo-Mir-21 Dno-Mir-21 Dre-Mir-21-P1 Ebu-Mir-21 Eca-Mir-21 Ete-Mir-21 Gga-Mir-21 Gja-Mir-21 Gmo-Mir-21-P1 Hsa-Mir-21 Laf-Mir-21 Lch-Mir-21 Loc-Mir-21 Mdo-Mir-21 Mml-Mir-21 Mmr-Mir-21 Mmu-Mir-21 Mun-Mir-21 Neu-Mir-21 Oan-Mir-21 Ocu-Mir-21 Pab-Mir-21 Pbv-Mir-21 Pma-Mir-21 Rno-Mir-21 Sha-Mir-21 Spt-Mir-21 Sto-Mir-21 Tgu-Mir-21 Tni-Mir-21-P1 Xtr-Mir-21

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884812.1: 781696-781755 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCAUGUCCGUCACUCUCGGCCUGUCACAUAGCUUAUCAGACUGGUGUUGGCUGUUAGAUUGCAAGGCGACAACAGUCUGUAGGCUGUCUGACAUUUCGGGCUCUUUCAUCUGACAACA

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Structure

        10          20        30        40        50          
AGGCAUGUCCGUCACUC--|   CC     C        U       G     G UGUUAG 
                   UCGG  UGUCA AUAGCUUA CAGACUG UGUUG C      \
                   GGCU  ACAGU UGUCGGAU GUCUGAC ACAGC G      A
ACAACAGUCUACUUUCUCG^   UU     C        -       A     G AACGUU 
.       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-21-P1_5p

mirBase accession

None

Sequence

0- UAGCUUAUCAGACUGGUGUUGGC -23

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Star sequence

Mal-Mir-21-P1_3p*

mirBase accession

None

Sequence

38- CGACAACAGUCUGUAGGCUGUC -60

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