MirGeneDB ID | Aca-Mir-1397 |
Family name |
MIR-1397 (all species) |
Seed |
GCAUUGC |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-1397
|
Paralogues |
|
Orthologues |
Ami-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Gja-Mir-1397
Neu-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Sha-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (anoCar2) |
3: 116429089-116429146 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAACUCACUGACAAACUGUGAUGUGUGCAUUGCAUUGCGAUGGGUUACAUCACUGGUCAUAGCAUGAUGUAACCCAACGCAGCAUGGUGUAAGCAUCGUAAUACAUUGGAGAUUUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAACUCACUGACAAACUG--| G CA A CUGGU
UGAUGU UGCAUUG UUGCG UGGGUUACAUCA C
GCUACG AUGUGGU GACGC ACCCAAUGUAGU A
AAAUUUAGAGGUUACAUAAU^ A AC A ACGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-1397_5p |
mirBase accession | MIMAT0021764 |
Sequence |
0- UGCAUUGCGAUGGGUUACAUCA -22
Get sequence
|
Star sequence |
Aca-Mir-1397_3p* |
mirBase accession | None |
Sequence |
36- AUGUAACCCAACGCAGCAUGGU -58
Get sequence
|