MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1397
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Cpi-Mir-1397  Gja-Mir-1397  Neu-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(Gallus_gallus.GRCg6a)		 1: 128273803-128273860 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGCUGUUGACUGAAUGCGAUGUGUGCAUUGCAUUGCGACGGGUUAUAUCACUAAUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAAACGUUGGAGAUUUAGA
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Structure
        10          20        30        40        50        
AAAGCUGUUGACUGAAU--|      G       CA     AC           CUAAU 
                   GCGAUGU UGCAUUG  UUGCG  GGGUUAUAUCA     C
                   UGCUGCG AUGUAGU  GACGC  CCCAAUGUAGU     G
AGAUUUAGAGGUUGCAAAG^      A       AC     AA           ACAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1397_5p
mirBase accessionMIMAT0007283
Sequence 
0- UGCAUUGCGACGGGUUAUAUCA -22
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Proposed targets TargetScanVert: gga-miR-1397-5p
miRDB: MIMAT0007283
Star sequence

Gga-Mir-1397_3p*
mirBase accessionMIMAT0007284
Sequence 
36- AUGUAACCCAACGCAGCAUGAU -58
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Proposed targets TargetScanVert: gga-miR-1397-3p
miRDB: MIMAT0007284