MirGeneDB ID | Neu-Mir-1397 |
Family name |
MIR-1397 (all species) |
Seed |
GCAUUGC |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-1397
Ami-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Gja-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Sha-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
|
Node of Origin (locus) |
Amniota
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Node of Origin (family) |
Amniota
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Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051817.1: 388872773-388872830 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UAAGUCACCGACACAUUGCGGUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGAAUUUAGCAUGAUGUAACCCAACGCAGCAUGAUGUAAGCAUUGUCAUACGUUGGAGGCUUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAGUCACCGACACAUU--| G CA AC CUGAA
GCGGUGU UGCAUUG UUGCG GGGUUACAUCA U
UGUUACG AUGUAGU GACGC CCCAAUGUAGU U
AAAUUCGGAGGUUGCAUAC^ A AC AA ACGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
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Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Mir-1397_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGCAUUGCGACGGGUUACAUCA -22
Get sequence
|
Star sequence |
Neu-Mir-1397_3p* (predicted) |
mirBase accession | None |
Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence
|