| MirGeneDB ID | Sha-Mir-1397 |
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| Family name |
MIR-1397 (all species) |
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| Seed |
GCAUUGC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-1397
Ami-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Gja-Mir-1397
Neu-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
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| Node of Origin (locus) |
Amniota
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| Node of Origin (family) |
Amniota
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Genome context
(DEVIL_add) |
GL849817.1: 302485-302542 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAGUCACUGACACAUUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGAAUUUAGCAUGAUGUAACCCAACGCAGCAUGAUGUAAGUGUCGUCAUACGUUGGAGAUUUAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAAGUCACUGACACAUU--| UG G CA AC CUGAA
GCGA U UGCAUUG UUGCG GGGUUACAUCA U
UGCU G AUGUAGU GACGC CCCAAUGUAGU U
AAAUUUAGAGGUUGCAUAC^ GU A AC AA ACGAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1397_5p |
| mirBase accession | None |
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| Sequence |
0- UGCAUUGCGACGGGUUACAUCA -22
Get sequence
|
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| Star sequence |
Sha-Mir-1397_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence
|
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