MirGeneDB ID | Ami-Mir-1397 |
Family name |
MIR-1397 (all species) |
Seed |
GCAUUGC |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-1397
|
Paralogues |
|
Orthologues |
Aca-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Gja-Mir-1397
Neu-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Sha-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017709083.1: 1016086-1016143 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UAAGUCACUGACAGAGUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAUACAUUGGAAACUUAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAGUCACUGACAGAGU--| G CA AC CUGGU
GCGAUGU UGCAUUG UUGCG GGGUUACAUCA C
UGCUGCG AUGUAGU GACGC CCCAAUGUAGU G
AAAUUCAAAGGUUACAUAG^ A AC AA ACAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ami-Mir-1397_5p |
mirBase accession | MIMAT0038314 |
Sequence |
0- UGCAUUGCGACGGGUUACAUCA -22
Get sequence
|
Star sequence |
Ami-Mir-1397_3p* |
mirBase accession | MIMAT0038315 |
Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence
|