MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1397
Paralogues
Orthologues Aca-Mir-1397  Cpi-Mir-1397  Gga-Mir-1397  Gja-Mir-1397  Neu-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709083.1: 1016086-1016143 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UAAGUCACUGACAGAGUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAUACAUUGGAAACUUAAA
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Structure
        10          20        30        40        50        
UAAGUCACUGACAGAGU--|      G       CA     AC           CUGGU 
                   GCGAUGU UGCAUUG  UUGCG  GGGUUACAUCA     C
                   UGCUGCG AUGUAGU  GACGC  CCCAAUGUAGU     G
AAAUUCAAAGGUUACAUAG^      A       AC     AA           ACAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ami-Mir-1397_5p

mirBase accessionMIMAT0038314
Sequence
0- UGCAUUGCGACGGGUUACAUCA -22
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Star sequence

Ami-Mir-1397_3p*

mirBase accessionMIMAT0038315
Sequence
36- AUGUAACCCAACGCAGCAUGAU -58
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