MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1397
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Cpi-Mir-1397  Gga-Mir-1397  Gja-Mir-1397  Neu-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Spt-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(TaeGut1_add)		 1: 92314174-92314231 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGUGCUGACUGAAUGCGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUAGUCCUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAGCGUCGUGAUACAUUGGAGAUUUAAA
Get precursor sequence
Structure
        10          20        30        40        50        
AAAAGUGCUGACUGAAU--|      G       CA     AC           CUAGU 
                   GCGAUGU UGCAUUG  UUGCG  GGGUUACAUCA     C
                   UGCUGCG AUGUAGU  GACGC  CCCAAUGUAGU     C
AAAUUUAGAGGUUACAUAG^      A       AC     AA           ACAAU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1397_5p
mirBase accessionMIMAT0025397
Sequence 
0- UGCAUUGCGACGGGUUACAUCA -22
Get sequence
Co-mature sequence

Tgu-Mir-1397_3p
mirBase accessionMIMAT0027341
Sequence 
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence