MirGeneDB ID | Gja-Mir-1397 |
Family name |
MIR-1397 (all species) |
Seed |
GCAUUGC |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-1397
Ami-Mir-1397
Cpi-Mir-1397
Gga-Mir-1397
Neu-Mir-1397
Oan-Mir-1397
Pbv-Mir-1397
Sha-Mir-1397
Spt-Mir-1397
Tgu-Mir-1397
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015174328.1: 240982-241039 [-]
|
Precursor (pre-Mir +30nt flank) |
UAAUUCACUGACAACCUGCGAUGUGUGCAUUGCAUUGCGAUGGGUUACAUCACUGGUCAUAACAUGAUGUAACCCAACGCAGCAUGAUGUAAAUGUCGUGAUACAUUGGAGAUUUUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAUUCACUGACAACCU--| G CA A CUGGU
GCGAUGU UGCAUUG UUGCG UGGGUUACAUCA C
UGCUGUA AUGUAGU GACGC ACCCAAUGUAGU A
AAUUUUAGAGGUUACAUAG^ A AC A ACAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
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Mature sequence |
Gja-Mir-1397_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGCAUUGCGAUGGGUUACAUCA -22
Get sequence
|
Star sequence |
Gja-Mir-1397_3p* |
mirBase accession | None |
Sequence |
36- AUGUAACCCAACGCAGCAUGAU -58
Get sequence
|