MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-1397

Family name MIR-1397 (all species)
Seed GCAUUGC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1397  Ami-Mir-1397  Cpi-Mir-1397  Gga-Mir-1397  Gja-Mir-1397  Neu-Mir-1397  Oan-Mir-1397  Pbv-Mir-1397  Sha-Mir-1397  Tgu-Mir-1397 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01012497.1: 499713-499770 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAGUCACUGACAGAGUACGAUGUGUGCAUUGCAUUGCGACGGGUUACAUCACUGGUCGUAACAUGAUGUAACCCAACGCAGCAUGAUGCAAGCAUUGUGAAAAAUUGGAGAUUUAAA
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Structure
        10          20        30        40        50        
UAAGUCACUGACAGAGU--|      G       CA     AC           CUGGU 
                   ACGAUGU UGCAUUG  UUGCG  GGGUUACAUCA     C
                   UGUUACG ACGUAGU  GACGC  CCCAAUGUAGU     G
AAAUUUAGAGGUUAAAAAG^      A       AC     AA           ACAAU 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-1397_5p (predicted)

mirBase accessionNone
Sequence
0- UGCAUUGCGACGGGUUACAUCA -22
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Star sequence

Spt-Mir-1397_3p* (predicted)

mirBase accessionNone
Sequence
36- AUGUAACCCAACGCAGCAUGAU -58
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