| MirGeneDB ID | Bta-Mir-1271 |
|---|
| Family name |
MIR-1271 (all species) |
|---|
| Seed |
UUGGCAC |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-1271
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-1271
Cpo-Mir-1271
Dno-Mir-1271
Ete-Mir-1271
Hsa-Mir-1271
Mml-Mir-1271
Mmu-Mir-1271
Rno-Mir-1271
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037334.1: 37843340-37843397 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACCUCUGUGUCCCCAGCACCCAGAUCAGUGCUUGGCACCUAGUAAGUACUCAGUAUAUACUUGUUGAGUGCCUGCUAUGUGCCAGGCAUUGUGCUGAGGGCUUUGGGGGGAUCCAGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCUCUGUGUCCCCAGCA- -| AU C A GUAUA
CC CAG CAGUGCUUGGCAC UAGUA GUACUCA U
GG GUC GUUACGGACCGUG AUCGU CGUGAGU A
GAGACCUAGGGGGGUUUCG A^ GU U C UGUUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-1271_5p |
| mirBase accession | MIMAT0009975 |
|---|
| Sequence |
0- CUUGGCACCUAGUAAGUACUCA -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-1271
|
|---|
| Star sequence |
Bta-Mir-1271_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGUGCCUGCUAUGUGCCAGGCA -58
Get sequence
|
|---|
