MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-1271

Family name MIR-1271 (all species)
Seed UUGGCAC
Species Cow (Bos taurus)
MiRBase ID bta-mir-1271
Paralogues
Orthologues Cfa-Mir-1271  Cpo-Mir-1271  Dno-Mir-1271  Eca-Mir-1271  Ete-Mir-1271  Hsa-Mir-1271  Laf-Mir-1271  Mml-Mir-1271  Mmu-Mir-1271  Pab-Mir-1271  Rno-Mir-1271 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037334.1: 37843340-37843397 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCUGUGUCCCCAGCACCCAGAUCAGUGCUUGGCACCUAGUAAGUACUCAGUAUAUACUUGUUGAGUGCCUGCUAUGUGCCAGGCAUUGUGCUGAGGGCUUUGGGGGGAUCCAGAG
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Structure
        10         20         30        40        50        
ACCUCUGUGUCCCCAGCA-  -|  AU             C     A       GUAUA 
                   CC CAG  CAGUGCUUGGCAC UAGUA GUACUCA     U
                   GG GUC  GUUACGGACCGUG AUCGU CGUGAGU     A
GAGACCUAGGGGGGUUUCG  A^  GU             U     C       UGUUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1271_5p

mirBase accessionMIMAT0009975
Sequence
0- CUUGGCACCUAGUAAGUACUCA -22
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Proposed targets TargetScanVert: bta-miR-1271
Star sequence

Bta-Mir-1271_3p*

mirBase accessionNone
Sequence
36- AGUGCCUGCUAUGUGCCAGGCA -58
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