| MirGeneDB ID | Pab-Mir-1271 |
|---|---|
| Family name | MIR-1271 (all species) |
| Seed | UUGGCAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1271 Cfa-Mir-1271 Cpo-Mir-1271 Dno-Mir-1271 Eca-Mir-1271 Ete-Mir-1271 Hsa-Mir-1271 Laf-Mir-1271 Mml-Mir-1271 Mmu-Mir-1271 Rno-Mir-1271 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 186465992-186466049 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | ACCUCUGUAUCCCCAGCACCCAGAUCAGUGCUUGGCACCUAGCAAGCACUCAGUAAAUACUUGUUGAGUGCCUGCUAUGUGCCAGGCAUUGUGCUGAGGGCUUUGUGGGGAUGCAGAGGet precursor sequence |
| Structure | 10 20 30 40 50 ACCUCUGUAUCCCCAGCA- -| AU C A GUAAA CC CAG CAGUGCUUGGCAC UAGCA GCACUCA U GG GUC GUUACGGACCGUG AUCGU CGUGAGU A GAGACGUAGGGGUGUUUCG A^ GU U C UGUUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Pab-Mir-1271_5p |
| mirBase accession | None |
| Sequence |
0- CUUGGCACCUAGCAAGCACUCA -22
Get sequence
|
| Star sequence | Pab-Mir-1271_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- AGUGCCUGCUAUGUGCCAGGCA -58
Get sequence
|
