MirGeneDB ID | Cpo-Mir-1271 |
Family name |
MIR-1271 (all species) |
Seed |
UUGGCAC |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-1271
|
Paralogues |
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Orthologues |
Bta-Mir-1271
Cfa-Mir-1271
Dno-Mir-1271
Eca-Mir-1271
Ete-Mir-1271
Hsa-Mir-1271
Laf-Mir-1271
Mml-Mir-1271
Mmu-Mir-1271
Pab-Mir-1271
Rno-Mir-1271
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_17: 22117662-22117719 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
ACCUCUGUAUCCCCAGCACCCAGAUCAGUGCUUGGCACCUAGUAAGCACUCAGUAAAUACUUGAUGAGUGCCUGCUAUGUGCCAGGCAUUGUGCUGGGGCUUUGGGGGGAUUCAGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUCUGUAUCCCCAGCA--| AU C A GUAAA
CCCAG CAGUGCUUGGCAC UAGUA GCACUCA U
GGGUC GUUACGGACCGUG AUCGU CGUGAGU A
GGAGACUUAGGGGGGUUUCG^ GU U C AGUUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-1271_5p |
mirBase accession | MIMAT0047411 |
Sequence |
0- CUUGGCACCUAGUAAGCACUCA -22
Get sequence
|
Star sequence |
Cpo-Mir-1271_3p* |
mirBase accession | MIMAT0047412 |
Sequence |
36- AGUGCCUGCUAUGUGCCAGGCA -58
Get sequence
|