| MirGeneDB ID | Rno-Mir-1271 |
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| Family name |
MIR-1271 (all species) |
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| Seed |
UUGGCAC |
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| Species |
Norway rat (Rattus norvegicus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1271
Cfa-Mir-1271
Cpo-Mir-1271
Dno-Mir-1271
Ete-Mir-1271
Hsa-Mir-1271
Mml-Mir-1271
Mmu-Mir-1271
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(rn6) |
chr17: 10572276-10572334 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUUCCCUAUCCCCAGCUCCCACAUCAGUGCUUGGCACCUGGUAAGCACUCAGUAACUACUUAGUGAGUGCCUGCUGUGUGCCAAGGCAUUGUGCUGAGGCUUUGGGGGGAUUUAGCUC
Get precursor sequence
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| Structure | 10 20 30 40 50
AUUUCCCUAUCCCCAGCU- - -| U - C A GUAAC
CC CA CA CAGUGC UUGGCAC UGGUA GCACUCA U
GG GU GU GUUACG AACCGUG GUCGU CGUGAGU A
CUCGAUUUAGGGGGGUUUC A C^ - G U C GAUUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Because there is only a single short read of the 3p arm the Group 2 status of this gene cannot be reliably assessed. |
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| 3' NTU |
Unknown
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| Motifs | No |
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Tissue expression
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| Ad |
Ad |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Dr |
Dr |
Du |
Du |
Du |
Du |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Li |
Li |
Li |
Li |
Me |
Me |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Ov |
Pa |
Pa |
St |
St |
St |
Te |
Ut |
Wh |
Br |
Fa |
He |
Ki |
La |
Li |
Li |
Lu |
Mu |
Pa |
Sk |
Sm |
Sp |
St |
Te |
Th |
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| Mature sequence |
Rno-Mir-1271_5p |
| mirBase accession | None |
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| Sequence |
0- CUUGGCACCUGGUAAGCACUCA -22
Get sequence
|
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| Star sequence |
Rno-Mir-1271_3p* |
| mirBase accession | None |
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| Sequence |
36- AGUGCCUGCUGUGUGCCAAGGCA -59
Get sequence
|
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