MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-1249

Family name MIR-1249 (all species)
Seed CGCCCUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-1249
Paralogues
Orthologues Bta-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Eca-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Laf-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Pab-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr10: 20818841-20818899 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUGUCCUCAGAUUCUUGUUUGCAUGGGGAGGAGGGAGGAGAGGGGCCAAGUUCCCUCCGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC
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Structure
        10          20         30        40        50         
CCUUGUCCUCAGAUUCUU--      AU  -|        A  A       CAAGUUCCCU 
                    GUUUGC  GG GGAGGAGGG GG GAGGGGC          \
                    CAAGCG  CC CUUCUUCCC CC CUUCCCG          C
CAGAACUUCCUGCUCAUCCU      GU  A^        -  C       CAAGGUCCGC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-1249_5p*
mirBase accessionNone
Sequence 
0- AGGAGGGAGGAGAGGGGCCAAG -22
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Mature sequence

Cfa-Mir-1249_3p
mirBase accessionMIMAT0034321
Sequence 
37- ACGCCCUUCCCCCCCUUCUUCA -59
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Proposed targets TargetScanVert: cfa-miR-1249
miRDB: MIMAT0034321