MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-1249

Family name MIR-1249 (all species)
Seed CGCCCUU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-1249
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Eca-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Laf-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Pab-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0264: 178972-179030 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCUCCGCGGAUUCUUGUUUGCGUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCUGUCAAGAC
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Structure
        10          20         30        40        50        60
CAGGCUCCGCGGAUUCUU--      GU  -|        A  A  U    CAA     CUC 
                    GUUUGC  GG GGAGGAGGG GG GA GGGC   GUUCC   U
                    CAAGCG  CC CUUCUUCCC CC CU CCCG   CAAGG   G
CAGAACUGUCUGCUCAUCCU      GU  A^        -  C  U    ---     UCC 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-1249_5p* (predicted)

mirBase accessionMIMAT0048585
Sequence
0- AGGAGGGAGGAGAUGGGCCAAGUUCC -26
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Mature sequence

Ocu-Mir-1249_3p

mirBase accessionMIMAT0048586
Sequence
37- ACGCCCUUCCCCCCCUUCUUCA -59
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