| MirGeneDB ID | Cja-Mir-1249 |
|---|---|
| Family name | MIR-1249 (all species) |
| Seed | CGCCCUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1249 Cfa-Mir-1249 Cpo-Mir-1249 Dno-Mir-1249 Eca-Mir-1249 Ete-Mir-1249 Hsa-Mir-1249 Laf-Mir-1249 Mml-Mir-1249 Mmr-Mir-1249 Mmu-Mir-1249 Ocu-Mir-1249 Pab-Mir-1249 Rno-Mir-1249 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 212737226-212737284 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUUGCUCCUCAGAUUCUUGUUGGCAUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGACGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUUGCUCCUCAGAUUCUU-- G AU -| A A U CAA CCUC GUU GC GG GGAGGAGGG GG GA GGGC GUUC U CAA CG CC CUUCUUCCC CC CU CCCG CAAG G CAGAACUUCCUGCUCAUCCU G GU A^ - C U --- GUCC 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-1249_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGAGGGAGGAGAUGGGCCAAGUUC -25
Get sequence
|
| Mature sequence | Cja-Mir-1249_3p |
| mirBase accession | None |
| Sequence |
37- ACGCCCUUCCCCCCCUUCUUCA -59
Get sequence
|
