MirGeneDB ID | Cpo-Mir-1249 |
Family name |
MIR-1249 (all species) |
Seed |
ACGCCCU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Bta-Mir-1249
Cfa-Mir-1249
Cja-Mir-1249
Dno-Mir-1249
Eca-Mir-1249
Ete-Mir-1249
Hsa-Mir-1249
Laf-Mir-1249
Mml-Mir-1249
Mmr-Mir-1249
Mmu-Mir-1249
Ocu-Mir-1249
Pab-Mir-1249
Rno-Mir-1249
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_216: 444858-444915 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUUGCAGUUCCGAUUCUUGUUUGCAUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCAUCCUUCAAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUGCAGUUCCGAUUCUU-- AU -| A A U CAA CUC
GUUUGC GG GGAGGAGGG GG GA GGGC GUUCC U
CAAGCG CC CUUCUUCCC CC CU CCCG CAAGG G
CAGAACUUCCUACUCAUCCU GU A^ - C - --- UCC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-1249_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGAGGGAGGAGAUGGGCCAAGUUCC -26
Get sequence
|
Mature sequence |
Cpo-Mir-1249_3p (predicted) |
mirBase accession | None |
Sequence |
36- AACGCCCUCCCCCCCUUCUUCA -58
Get sequence
|