Mir-1249

MirGeneDB ID

Eca-Mir-1249

Family name

MIR-1249 (all species)

Seed

CGCCCUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-1249

Paralogues

Orthologues

Bta-Mir-1249 Cfa-Mir-1249 Cja-Mir-1249 Cpo-Mir-1249 Dno-Mir-1249 Ete-Mir-1249 Hsa-Mir-1249 Laf-Mir-1249 Mml-Mir-1249 Mmr-Mir-1249 Mmu-Mir-1249 Ocu-Mir-1249 Pab-Mir-1249 Rno-Mir-1249

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009175.1: 42329015-42329074 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUUGUUCCUCAGAUUCUUGUUUGCGUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC

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Structure

        10         20         30        40        50          
UCUUGUUCCUCAGAUUCUU-      GU  -|        A  A  U    CAAGUUCCCU 
                    GUUUGC  GG GGAGGAGGG GG GA GGGC          \
                    CAAGCG  CC CUUCUUCCC CC CU CCCG          C
CAGAACUUCCUGCUCAUCCU      GU  A^        -  C  U    CAAGGUCCGU 
.       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-1249_5p* (predicted)

mirBase accession

None

Sequence

0- GAGGAGGGAGGAGAUGGGCCAAG -23

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Mature sequence

Eca-Mir-1249_3p

mirBase accession

MIMAT0034563

Sequence

38- ACGCCCUUCCCCCCCUUCUUCA -60

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