MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1249

Family name MIR-1249 (all species)
Seed CGCCCUU
Species Horse (Equus caballus)
MiRBase ID eca-mir-1249
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Laf-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Pab-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009175.1: 42329015-42329074 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUGUUCCUCAGAUUCUUGUUUGCGUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC
Get precursor sequence
Structure
        10         20         30        40        50          
UCUUGUUCCUCAGAUUCUU-      GU  -|        A  A  U    CAAGUUCCCU 
                    GUUUGC  GG GGAGGAGGG GG GA GGGC          \
                    CAAGCG  CC CUUCUUCCC CC CU CCCG          C
CAGAACUUCCUGCUCAUCCU      GU  A^        -  C  U    CAAGGUCCGU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-1249_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAGGAGGGAGGAGAUGGGCCAAG -23
Get sequence
Mature sequence

Eca-Mir-1249_3p
mirBase accessionMIMAT0034563
Sequence 
38- ACGCCCUUCCCCCCCUUCUUCA -60
Get sequence