MirGeneDB 2.1
MirGeneDB ID

Hsa-Mir-1249

Family name MIR-1249 (all species)
Seed CGCCCUU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-1249
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Ete-Mir-1249  Mml-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)		 chr22: 45200958-45201016 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGCUCCUCAGAUUAUUGUUGGCAUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGGCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC
Get precursor sequence
Structure
        10          20         30        40        50        60
CCUGCUCCUCAGAUUAUU--   G  AU  -|        A  A  U    CAA    CCUC 
                    GUU GC  GG GGAGGAGGG GG GA GGGC   GUUC    U
                    CAA CG  CC CUUCUUCCC CC CU CCCG   CAAG    G
CAGAACUUCCUGCUCAUCCU   G  GU  A^        -  C  U    ---    GUCG 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Star sequence

Hsa-Mir-1249_5p*
mirBase accessionMIMAT0032029
Sequence 
0- AGGAGGGAGGAGAUGGGCCAAGUUC -25
Get sequence
Proposed targets TargetScanVert: hsa-miR-1249-5p
miRDB: MIMAT0032029
Mature sequence

Hsa-Mir-1249_3p
mirBase accessionMIMAT0005901
Sequence 
37- ACGCCCUUCCCCCCCUUCUUCA -59
Get sequence
Proposed targets microrna.org: MIMAT0005901
TargetScanVert: hsa-miR-1249-3p
miRDB: MIMAT0005901