MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-1249

Family name MIR-1249 (all species)
Seed CGCCCUU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Eca-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Pab-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010129.1: 324783-324840 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUUCCGCAGAUUCUUGUUUGCGUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGA
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Structure
        10         20         30        40        50         
CUUGUUCCGCAGAUUCUU-      GU  -|        A  A  U    CAAGUUCCCU 
                   GUUUGC  GG GGAGGAGGG GG GA GGGC          \
                   CAAGCG  CC CUUCUUCCC CC CU CCCG          C
AGAACUUCCUGCUCAUCCU      GU  A^        -  C  U    CAAGGUCCGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wh
Star sequence

Laf-Mir-1249_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGAGGGAGGAGAUGGGCCAAG -22
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Mature sequence

Laf-Mir-1249_3p

mirBase accessionNone
Sequence
37- ACGCCCUUCCCCCCCUUCUUC -58
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