Let-7-P2b1

MirGeneDB ID

Cja-Let-7-P2b1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Let-7-P1b Cja-Let-7-P1c Cja-Let-7-P1d Cja-Let-7-P2a1 Cja-Let-7-P2a2 Cja-Let-7-P2a3 Cja-Let-7-P2b2 Cja-Let-7-P2b3 Cja-Let-7-P2c1 Cja-Let-7-P2c2 Cja-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2b1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2b1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2b1 Cfa-Let-7-P2b1 Cli-Let-7-P2b1 Cpi-Let-7-P2b1 Cpo-Let-7-P2b1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b1 Dpu-Let-7 Dre-Let-7-P2b1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2b1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2b1 Gga-Let-7-P2b1 Gja-Let-7-P2b1 Gmo-Let-7-P2b1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2b1 Isc-Let-7 Laf-Let-7-P2b1 Lan-Let-7 Lch-Let-7-P2b1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2b1 Mal-Let-7-P2b1a Mdo-Let-7-P2b1 Mgi-Let-7 Mml-Let-7-P2b1 Mmr-Let-7-P2b1 Mmu-Let-7-P2b1 Mom-Let-7 Mun-Let-7-P2b1 Neu-Let-7-P2b1 Npo-Let-7 Oan-Let-7-P2b1 Obi-Let-7 Ocu-Let-7-P2b1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2b1 Pau-Let-7 Pbv-Let-7-P2b1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2b1 Rph-Let-7 Sha-Let-7-P2b1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2b1 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tgu-Let-7-P2b1 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021915.1: 71145974-71146050 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUCCAGAAGAAAAGAUUGCUCUAUCAGAGUGAGGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGAGGAGUAGACUUGCUGCAUUAUUUUGU

Get precursor sequence

Structure

        10           20        30        40        50        60        
AUUCCAGAAGAAAAGAU---|     A    AGU                     GUGGGGUAGUGAUUU 
                    UGCUCU UCAG   GAGGUAGUAGAUUGUAUAGUU               U
                    AUGAGG AGUC   UUCCGUUAUCUAACAUAUCAA               A
UGUUUUAUUACGUCGUUCAG^     -    CC-                     UAGAGGACUUGUCCC 
     130       120        110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Cja-Let-7-P2b1_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGAUUGUAUAGUU -22

Get sequence

Star sequence

Cja-Let-7-P2b1_3p*

mirBase accession

None

Sequence

56- CUAUACAAUCUAUUGCCUUCC -77

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