MirGeneDB ID | Spt-Let-7-P2b1 |
---|---|
Family name | LET-7 (all species) |
Seed | GAGGUAG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Let-7-P1b Spt-Let-7-P1c Spt-Let-7-P1d Spt-Let-7-P2a1 Spt-Let-7-P2a2 Spt-Let-7-P2a3 Spt-Let-7-P2a4 Spt-Let-7-P2b2 Spt-Let-7-P2b3 Spt-Let-7-P2b4 Spt-Let-7-P2c1 Spt-Let-7-P2c2 Spt-Let-7-P2c3 |
Orthologues | Aae-Let-7 Aca-Let-7-P2b1 Ami-Let-7-P2b1 Bge-Let-7 Bpl-Let-7 Bta-Let-7-P2b1 Cfa-Let-7-P2b1 Cgi-Let-7 Cli-Let-7-P2b1 Cpi-Let-7-P2b1 Cpo-Let-7-P2b1 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b1 Dpu-Let-7 Dre-Let-7-P2b1a Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P2b1 Gga-Let-7-P2b1 Gja-Let-7-P2b1 Gmo-Let-7-P2b1a Hme-Let-7 Hsa-Let-7-P2b1 Isc-Let-7 Lan-Let-7 Lch-Let-7-P2b1 Lgi-Let-7 Loc-Let-7-P2b1 Mal-Let-7-P2b1a Mdo-Let-7-P2b1 Mml-Let-7-P2b1 Mmu-Let-7-P2b1 Mun-Let-7-P2b1 Npo-Let-7 Oan-Let-7-P2b1 Obi-Let-7 Ocu-Let-7-P2b1 Ovu-Let-7 Pbv-Let-7-P2b1 Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P2b1 Sha-Let-7-P2b1 Sko-Let-7 Spu-Let-7 Tca-Let-7 Tgu-Let-7-P2b1 Xbo-Let-7 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01004593.1: 1541287-1541363 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUAUGUGCUAUCCAAAUUUCUCUAUCAGGUUGAGGUAGUAGAUUGUAUAGUUGUAGGGUAGCUGUUUUGCCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGAGGAGUAAAAAUUCUGCAGUUCUGUUAGet precursor sequence |
Structure | 10 20 30 40 50 60 UUAUGUGCUAUCCAAAUUU---| A UU GUAGGGUAGCUGUUU CUCU UCAGG GAGGUAGUAGAUUGUAUAGUU U GAGG AGUCC UUCCGUUAUCUAACAUAUCAA G AUUGUCUUGACGUCUUAAAAAU^ - C- UAGAGGACUUGUCCC 130 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Spt-Let-7-P2b1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGAUUGUAUAGUU -22
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|
Star sequence | Spt-Let-7-P2b1_3p* (predicted) |
mirBase accession | None |
Sequence |
56- CUAUACAAUCUAUUGCCUUCC -77
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|