| MirGeneDB ID | Cja-Mir-484 |
|---|---|
| Family name | MIR-484 (all species) |
| Seed | CAGGCUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-484 Cfa-Mir-484 Dno-Mir-484 Eca-Mir-484 Hsa-Mir-484 Laf-Mir-484 Mml-Mir-484 Mmr-Mir-484-P1 Mmr-Mir-484-P2 Mmu-Mir-484 Ocu-Mir-484 Pab-Mir-484 Rno-Mir-484 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 11306719-11306775 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCUCUCCGCGCGGGGCAUGCUGGGAACCCCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGGGACUUUCCCGGGGAGGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUCUCCGCGCGGGGCAUGCU-- AACCC -| G C GCCCU GGG CGGG GGGGGC GGGCCU GCG G CCC GCCC CCCCUG CUCGGA UGC C GAGGGGCCCUUUCAGGGAUAAAUC AAAUA U^ A C UCCGA 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008). |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Cja-Mir-484_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CGGGGGGGGCGGGGCCUCGCG -21
Get sequence
|
| Mature sequence | Cja-Mir-484_3p |
| mirBase accession | None |
| Sequence |
35- UCAGGCUCAGUCCCCUCCCGAU -57
Get sequence
|
