MirGeneDB ID | Eca-Mir-484 |
Family name |
MIR-484 (all species) |
Seed |
CAGGCUC |
Species |
Horse (Equus caballus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-484
Cfa-Mir-484
Cja-Mir-484
Dno-Mir-484
Hsa-Mir-484
Laf-Mir-484
Mml-Mir-484
Mmr-Mir-484-P1
Mmr-Mir-484-P2
Mmu-Mir-484
Ocu-Mir-484
Pab-Mir-484
Rno-Mir-484
|
Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009160.1: 31171357-31171413 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCCUCCCCGCGCGGGGCGUGCUGGGAACCCCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGGGACCUUCCCGGGGCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUCCCCGCGCGGGGCGUGCU-- AACCC -| G C GCCCU
GGG CGGG GGGGGC GGGCCU GCG G
CCC GCCC CCCCUG CUCGGA UGC C
GCGGGGCCCUUCCAGGGAUAAAUC AAAUA U^ A C UCCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008). |
3' NTU |
No
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Motifs | No |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-484_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGGGGGGGGCGGGGCCUCGCG -21
Get sequence
|
Mature sequence |
Eca-Mir-484_3p |
mirBase accession | None |
Sequence |
35- UCAGGCUCAGUCCCCUCCCGAU -57
Get sequence
|