MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-484

Family name MIR-484 (all species)
Seed CAGGCUC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-484  Cfa-Mir-484  Cja-Mir-484  Dno-Mir-484  Eca-Mir-484  Hsa-Mir-484  Laf-Mir-484  Mml-Mir-484  Mmr-Mir-484-P1  Mmr-Mir-484-P2  Mmu-Mir-484  Pab-Mir-484  Rno-Mir-484 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
Precursor
(pre-Mir +30nt flank)
CGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAU
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Structure
           10          20      
--    -      G      --| C   CC 
  CGGG GGGGGC GGGCCU  CG GGC  U
  GCCC CCCCUG CUCGGA  GC CCG  G
UA    U      A      CU^ U   AC 
      50        40        30
Deep sequencing
CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annotated as the mature arm (Babiarz et al. 2008).
3' NTU No
MotifsNo
Star sequence

Ocu-Mir-484_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGGGGGGCGGGGCCUCGCG -21
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Mature sequence

Ocu-Mir-484_3p

mirBase accessionNone
Sequence
35- UCAGGCUCAGUCCCCUCCCGAU -57
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