| MirGeneDB ID | Laf-Mir-484 |
|---|---|
| Family name | MIR-484 (all species) |
| Seed | CAGGCUC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-484 Cfa-Mir-484 Cja-Mir-484 Dno-Mir-484 Eca-Mir-484 Hsa-Mir-484 Mml-Mir-484 Mmr-Mir-484-P1 Mmr-Mir-484-P2 Mmu-Mir-484 Ocu-Mir-484 Pab-Mir-484 Rno-Mir-484 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010151.1: 1822007-1822063 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCUCCCCGCGCGGGGUGUGCUGGGAACCCUGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAAACCCUAAAUAGGGACCUUCCAUGGGGGGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUCCCCGCGCGGGGUGUGCU- AACCC- -| G C GCCCU GGG UGGG GGGGGC GGGCCU GCG G CCC GCCC CCCCUG CUCGGA UGC C GGGGGUACCUUCCAGGGAUAAAU AAAAUA U^ A C UCCGA 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008). |
| 3' NTU | No |
| Motifs | UG at 5p(-14) |
| Star sequence | Laf-Mir-484_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGGGGGGGCGGGGCCUCGCG -21
Get sequence
|
| Mature sequence | Laf-Mir-484_3p |
| mirBase accession | None |
| Sequence |
35- UCAGGCUCAGUCCCCUCCCGAU -57
Get sequence
|
