MirGeneDB ID | Pab-Mir-484 |
Family name |
MIR-484 (all species) |
Seed |
CAGGCUC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-484
Cfa-Mir-484
Cja-Mir-484
Dno-Mir-484
Eca-Mir-484
Hsa-Mir-484
Laf-Mir-484
Mml-Mir-484
Mmr-Mir-484-P1
Mmr-Mir-484-P2
Mmu-Mir-484
Ocu-Mir-484
Rno-Mir-484
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054697.2: 17817573-17817629 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCUAUCCGCGCGGGGCACGCUGGGAACCCCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGGGACUUUCCCGGGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUAUCCGCGCGGGGCACGCU-- AACCC -| G C GCCCU
GGG CGGG GGGGGC GGGCCU GCG G
CCC GCCC CCCCUG CUCGGA UGC C
GGGGGGCCCUUUCAGGGAUAAAUC AAAUA U^ A C UCCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008). |
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Pab-Mir-484_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGGGGGGGGCGGGGCCUCGCG -21
Get sequence
|
Mature sequence |
Pab-Mir-484_3p |
mirBase accession | None |
Sequence |
35- UCAGGCUCAGUCCCCUCCCGAU -57
Get sequence
|