MirGeneDB ID | Mmr-Mir-484-P1 |
Family name |
MIR-484 (all species) |
Seed |
CAGGCUC |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
mmr-mir-484
|
Paralogues |
Mmr-Mir-484-P2
|
Orthologues |
Bta-Mir-484
Cfa-Mir-484
Cja-Mir-484
Dno-Mir-484
Eca-Mir-484
Hsa-Mir-484
Laf-Mir-484
Mml-Mir-484
Mmu-Mir-484
Ocu-Mir-484
Pab-Mir-484
Rno-Mir-484
|
Node of Origin (locus) |
M. murinus
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007677.1: 16041471-16041527 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCCUCCCCGCGCGGGGCAGGCUGGGAACUCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGCGACUUUCCCGGGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCCUCCCCGCGCGGGGC----| CU GAAC - G C GCCCU
AGG GG UCGGG GGGGGC GGGCCU GCG G
UCC CC AGCCC CCCCUG CUCGGA UGC C
GGGGGGCCCUUUCAGCGAUAAA^ -- AAAU U A C UCCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008). |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mmr-Mir-484-P1_5p* (predicted) |
mirBase accession | MIMAT0049230 |
Sequence |
0- CGGGGGGGGCGGGGCCUCGCG -21
Get sequence
|
Mature sequence |
Mmr-Mir-484-P1_3p |
mirBase accession | None |
Sequence |
35- UCAGGCUCAGUCCCCUCCCGAU -57
Get sequence
|