MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-484

Family name MIR-484 (all species)
Seed CAGGCUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-484
Paralogues
Orthologues Bta-Mir-484  Cfa-Mir-484  Cja-Mir-484  Dno-Mir-484  Eca-Mir-484  Hsa-Mir-484  Laf-Mir-484  Mml-Mir-484  Mmr-Mir-484-P1  Mmr-Mir-484-P2  Mmu-Mir-484  Ocu-Mir-484  Pab-Mir-484 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr10: 27855-27911 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCGUCUUCUCCGCGCAGGGCAUGCAGGGAAGGGGGGGCGGGGCCUCGCGGCCCUGCUGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCUCAAAAUAGGGGGUUAUCUGGGGGA
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Structure
        10               20        30        40        50       
CGGCGUCUUCUCCGCGC-------|  GCAUGCA    AGG      G      C   GCCCU 
                        AGG       GGGA   GGGGGC GGGCCU GCG     G
                        UCC       CCCU   CCCCUG CUCGGA UGC     C
AGGGGGUCUAUUGGGGGAUAAAAC^  AAAUAG-    ---      A      C   UCCGU 
     110       100        90            80        70        60
Deep sequencing
CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008).
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-484_5p*
mirBase accessionNone
Sequence 
0- AAGGGGGGGCGGGGCCUCGCG -21
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Mature sequence

Rno-Mir-484_3p
mirBase accessionMIMAT0005319
Sequence 
35- UCAGGCUCAGUCCCCUCCCGAU -57
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Proposed targets microrna.org: MIMAT0005319
TargetScanVert: rno-miR-484
miRDB: MIMAT0005319