| MirGeneDB ID | Cja-Mir-486 |
|---|---|
| Family name | MIR-486 (all species) |
| Seed | CCUGUAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-486 Cfa-Mir-486 Cpo-Mir-486 Dno-Mir-486 Eca-Mir-486 Ete-Mir-486 Hsa-Mir-486 Laf-Mir-486 Mml-Mir-486 Mml-Mir-486-as Mmr-Mir-486 Mmu-Mir-486 Ocu-Mir-486 Pab-Mir-486 Rno-Mir-486 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 39539125-39539187 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCGGCUCUGAUCUCCAUCCUCCCUGGGGCAUCCUGUACUGAGCUGCCCCGAGGCCCUUCAUGCUGCCCAGCUCGGGGCAGCUCAGUACAGGAUACUUCGGGGUGGGAGUCAGCAGGAGGCAAGGet precursor sequence |
| Structure | 10 20 30 40 50 60
CCGGCUCUGAUCUCCAU-| U C GCCCUUCA
CC CCCUGGGG AUCCUGUACUGAGCUGCCCCGAG U
GG GGGGCUUC UAGGACAUGACUCGACGGGGCUC G
GAACGGAGGACGACUGAG^ U A GACCCGUC
120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Mir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-486_5p |
| mirBase accession | None |
| Sequence |
0- UCCUGUACUGAGCUGCCCCGAG -22
Get sequence
|
| Star sequence | Cja-Mir-486_3p* |
| mirBase accession | None |
| Sequence |
42- CGGGGCAGCUCAGUACAGGAU -63
Get sequence
|
