MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-486

Family name MIR-486 (all species)
Seed CCUGUAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-486  Cfa-Mir-486  Cpo-Mir-486  Dno-Mir-486  Eca-Mir-486  Ete-Mir-486  Hsa-Mir-486  Laf-Mir-486  Mml-Mir-486  Mml-Mir-486-as  Mmr-Mir-486  Mmu-Mir-486  Ocu-Mir-486  Pab-Mir-486  Rno-Mir-486 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021927.1: 39539125-39539187 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGCUCUGAUCUCCAUCCUCCCUGGGGCAUCCUGUACUGAGCUGCCCCGAGGCCCUUCAUGCUGCCCAGCUCGGGGCAGCUCAGUACAGGAUACUUCGGGGUGGGAGUCAGCAGGAGGCAAG
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Structure
        10         20        30        40        50        60 
CCGGCUCUGAUCUCCAU-| U        C                       GCCCUUCA 
                  CC CCCUGGGG AUCCUGUACUGAGCUGCCCCGAG        U
                  GG GGGGCUUC UAGGACAUGACUCGACGGGGCUC        G
GAACGGAGGACGACUGAG^ U        A                       GACCCGUC 
 120       110       100        90        80        70
Deep sequencing
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CommentMir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-486_5p
mirBase accessionNone
Sequence 
0- UCCUGUACUGAGCUGCCCCGAG -22
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Star sequence

Cja-Mir-486_3p*
mirBase accessionNone
Sequence 
42- CGGGGCAGCUCAGUACAGGAU -63
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