| MirGeneDB ID | Eca-Mir-486 |
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| Family name |
MIR-486 (all species) |
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| Seed |
CCUGUAC |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-486
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| Paralogues |
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| Orthologues |
Bta-Mir-486
Cfa-Mir-486
Cja-Mir-486
Cpo-Mir-486
Dno-Mir-486
Ete-Mir-486
Hsa-Mir-486
Laf-Mir-486
Mml-Mir-486
Mml-Mir-486-as
Mmr-Mir-486
Mmu-Mir-486
Ocu-Mir-486
Pab-Mir-486
Rno-Mir-486
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009174.1: 3721487-3721550 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCAGCUCUGACCUCCGUCCUCCCUGAGGGAUCCUGUACUGAGCUGCCCCGAGGCCCUUCACUGUGCCCAGCUCGGGGCAGCUCAGUACAGGAUGCGUCGGGGUGGGAGUCGGCAGGAAGUGGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCAGCUCUGACCUCCGU--| U GGG GCCCUUCA
CC CCCUGA AUCCUGUACUGAGCUGCCCCGAG C
GG GGGGCU UAGGACAUGACUCGACGGGGCUC U
GGGGUGAAGGACGGCUGAG^ U GCG GACCCGUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Mir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ. This orientation is the reverse compliment to what is submitted in miRBase. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-486_5p |
| mirBase accession | MIMAT0013186 |
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| Sequence |
0- UCCUGUACUGAGCUGCCCCGAG -22
Get sequence
|
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| Star sequence |
Eca-Mir-486_3p* |
| mirBase accession | MIMAT0013187 |
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| Sequence |
42- CGGGGCAGCUCAGUACAGGAUG -64
Get sequence
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