MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-486

Family name MIR-486 (all species)
Seed CCUGUAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-486  Cfa-Mir-486  Cja-Mir-486  Cpo-Mir-486  Dno-Mir-486  Eca-Mir-486  Ete-Mir-486  Hsa-Mir-486  Laf-Mir-486  Mml-Mir-486  Mml-Mir-486-as  Mmr-Mir-486  Mmu-Mir-486  Ocu-Mir-486  Rno-Mir-486 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054686.2: 43716097-43716160 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCACCUCUUGCUGACUCCCACCCCGAGGUAUCCUGUACUGAGCUGCCCCGAGCUGGGCAGCAUGAAGGGCCUCGGGGCAGCUCAGUACAGGAUGCCCCAGGGAGGAUGGAGAUCAGAGCUGGCC
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Structure
        10          20        30        40        50        60 
UCACCUCUUGCUGACUC--| A   CGA                          CUGGGCAG 
                   CC CCC   GGUAUCCUGUACUGAGCUGCCCCGAG        C
                   GG GGG   CCGUAGGACAUGACUCGACGGGGCUC        A
CCGGUCGAGACUAGAGGUA^ A   ACC                          CGGGAAGU 
  120       110       100        90        80        70
Deep sequencing
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CommentMir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ.
3' NTU No
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-486_5p

mirBase accessionNone
Sequence
0- UCCUGUACUGAGCUGCCCCGAG -22
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Star sequence

Pab-Mir-486_3p*

mirBase accessionNone
Sequence
42- CGGGGCAGCUCAGUACAGGAUG -64
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