MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-486

Family name MIR-486 (all species)
Seed CCUGUAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-486
Paralogues
Orthologues Bta-Mir-486  Cfa-Mir-486  Cja-Mir-486  Dno-Mir-486  Eca-Mir-486  Ete-Mir-486  Hsa-Mir-486  Laf-Mir-486  Mml-Mir-486  Mml-Mir-486-as  Mmr-Mir-486  Mmu-Mir-486  Ocu-Mir-486  Pab-Mir-486  Rno-Mir-486 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_80: 1296162-1296225 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCAGCUCUGAUCCCAGCCUCCCUGAGGGAUCCUGUACUGAGCUGCCCCGAGGCCCUUCCUUGUGCCCCGCUCGGGGCAGCUCAGUACAGGAUGCAUCGGGGUGGGAGACAGCAGGGAGCAAGG
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Structure
        10          20        30        40        50        60 
GCCAGCUCUGAUCCCAG--| U      GGG                       GCCCUUCC 
                   CC CCCUGA   AUCCUGUACUGAGCUGCCCCGAG        U
                   GG GGGGCU   UAGGACAUGACUCGACGGGGCUC        U
GGAACGAGGGACGACAGAG^ U      ACG                       GCCCCGUG 
  120       110       100        90        80        70
Deep sequencing
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CommentMir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-486_5p
mirBase accessionMIMAT0047277
Sequence 
0- UCCUGUACUGAGCUGCCCCGAG -22
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Star sequence

Cpo-Mir-486_3p*
mirBase accessionMIMAT0047278
Sequence 
42- CGGGGCAGCUCAGUACAGGAUG -64
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