MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-486

Family name MIR-486 (all species)
Seed CCUGUAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-486
Paralogues
Orthologues Bta-Mir-486  Cfa-Mir-486  Cja-Mir-486  Cpo-Mir-486  Dno-Mir-486  Eca-Mir-486  Ete-Mir-486  Hsa-Mir-486  Laf-Mir-486  Mml-Mir-486  Mml-Mir-486-as  Mmr-Mir-486  Mmu-Mir-486  Ocu-Mir-486  Pab-Mir-486 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 1621823597: 127-190 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGCUCUGAUCUUGCCCUCCCUGAAGGGUCCUGUACUGAGCUGCCCCGAGGUCCUUCAUUGUGCUCAGCUCGGGGCAGCUCAGUACAGGAUGCGUCGGGGUGGGAGACAGCAGGAAACAAGC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCCAGCUCUGAUCUUGC--| U      AGG                       GUCCUUCA 
                   CC CCCUGA   GUCCUGUACUGAGCUGCCCCGAG        U
                   GG GGGGCU   UAGGACAUGACUCGACGGGGCUC        U
CGAACAAAGGACGACAGAG^ U      GCG                       GACUCGUG 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentMir-486 is palindromic. This orientation is 5'-3' with respect to the host gene, as well as rabbit and cow where the mature and star sequences differ. which is the reverse compliment to what is submitted in miRBase. This sequence is not in the assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-486_5p
mirBase accessionMIMAT0037265
Sequence 
0- UCCUGUACUGAGCUGCCCCGAG -22
Get sequence
Proposed targets TargetScanVert: rno-miR-486
miRDB: MIMAT0037265
Star sequence

Rno-Mir-486_3p*
mirBase accessionNone
Sequence 
42- CGGGGCAGCUCAGUACAGGAUG -64
Get sequence