| MirGeneDB ID | Cja-Mir-615 |
|---|---|
| Family name | MIR-615 (all species) |
| Seed | CCGAGCC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-615 Cfa-Mir-615 Cpo-Mir-615 Eca-Mir-615 Ete-Mir-615 Hsa-Mir-615 Laf-Mir-615 Mml-Mir-615 Mmr-Mir-615 Mmu-Mir-615 Ocu-Mir-615 Pab-Mir-615 Rno-Mir-615 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021923.1: 61956664-61956727 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGGAUUCCAGCGACUCGGGAGGGGCGGGAGGGGGGUCCCCGGUGCUCGGAUCUCGAGGGUGCUUAUUGUUCGGUCCGAGCCUGGGUCUCCCUCUUCCCCCCAACCCCCCCUCAGCCCCUCCGGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGGAUUCCAGCGACUCGGGA---| C UC U UCGAGGGUG GGGG GGGAGGGGGG CCCGG GCUCGGAUC \ CCCC CCUUCUCCCU GGGUC CGAGCCUGG C CGGCCUCCCCGACUCCCCCCCAA^ - CU - CUUGUUAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-615_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGGGUCCCCGGUGCUCGGAUC -22
Get sequence
|
| Mature sequence | Cja-Mir-615_3p (predicted) |
| mirBase accession | None |
| Sequence |
43- UCCGAGCCUGGGUCUCCCUCU -64
Get sequence
|
