MirGeneDB ID | Eca-Mir-615 |
Family name |
MIR-615 (all species) |
Seed |
CCGAGCC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-615
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Paralogues |
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Orthologues |
Bta-Mir-615
Cfa-Mir-615
Cja-Mir-615
Cpo-Mir-615
Ete-Mir-615
Hsa-Mir-615
Laf-Mir-615
Mml-Mir-615
Mmr-Mir-615
Mmu-Mir-615
Ocu-Mir-615
Pab-Mir-615
Rno-Mir-615
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009153.1: 71801156-71801219 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGGAUUCCAGCGACGCGGGAGGGGCGGGAGGGGGGUCCCCGGUGCUCGGAUCUCGAGGGUGCUUAUUGUUCGGUCCGAGCCUGGGUCUCCCUCUCCCCCCCUCCUCAGCCCCUCCGGCUGCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGAUUCCAGCGACGCG---| C UC U UCGAGGGUG
GGAGGGG GGGAGGGGGG CCCGG GCUCGGAUC \
CCUCCCC CCCUCUCCCU GGGUC CGAGCCUGG C
AGUCGUCGGCCUCCCCGACU^ - CU - CUUGUUAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-615_5p* (predicted) |
mirBase accession | MIMAT0012976 |
Sequence |
0- GGGGGUCCCCGGUGCUCGGAUC -22
Get sequence
|
Mature sequence |
Eca-Mir-615_3p |
mirBase accession | MIMAT0012977 |
Sequence |
43- UCCGAGCCUGGGUCUCCCUCU -64
Get sequence
|