MirGeneDB ID | Ocu-Mir-615 |
Family name |
MIR-615 (all species) |
Seed |
CCGAGCC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-615
Cfa-Mir-615
Cja-Mir-615
Cpo-Mir-615
Eca-Mir-615
Ete-Mir-615
Hsa-Mir-615
Laf-Mir-615
Mml-Mir-615
Mmr-Mir-615
Mmu-Mir-615
Pab-Mir-615
Rno-Mir-615
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
1992045267: 125-188 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGCUCCCAGCGACUCGGGAGGGGCGGGAGGGGGGUCCCCGGUGCCCGGACCUGGAGGGUGCUUGCUGUUCGGUCCGAGCCUGGGUCUCCCUCUUCCCCCCACCCCCCCUCAGCCCCUCCGGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGCUCCCAGCGACUCG---| A C UC U C UGGAGGGUG
GG GGGG GGGAGGGGGG CCCGG GC CGGACC \
CC CCCC CCUUCUCCCU GGGUC CG GCCUGG C
CCGGCCUCCCCGACUCCCCC^ A - CU - A CUUGUCGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-615_5p* |
mirBase accession | None |
Sequence |
0- GGGGGUCCCCGGUGCCCGGACC -22
Get sequence
|
Mature sequence |
Ocu-Mir-615_3p |
mirBase accession | None |
Sequence |
43- UCCGAGCCUGGGUCUCCCUCU -64
Get sequence
|