Mir-505-v2

MirGeneDB ID

Cpo-Mir-505-v2

Family name

MIR-505 (all species)

Seed

UCAACAC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-505

Paralogues

Cpo-Mir-505-v1

Orthologues

Bta-Mir-505-v2 Cfa-Mir-505-v2 Cja-Mir-505 Dno-Mir-505-v2 Eca-Mir-505-v2 Ete-Mir-505-v2 Hsa-Mir-505-v2 Laf-Mir-505-v2 Mml-Mir-505-v2 Mmr-Mir-505-v2 Mmu-Mir-505-v2 Ocu-Mir-505-v2 Pab-Mir-505-v2 Rno-Mir-505-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_79: 2306789-2306847 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-505-v2)

Mir-505-v1 scaffold_79: 2306789-2306847 [+] UCSC
Mir-505-v2 scaffold_79: 2306789-2306847 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CCUGCGGUGGUAAAUUGAUGCACUCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC

Get precursor sequence

Structure

        10           20        30        40        50         
CCUGCGGUGGUAAAUUG---|   A U   U           G    A       UUCUGC 
                    AUGC C CAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG G GUC CUCCUUUGGUC UUCA AACUGCG      C
CUUUUAGGUGCUUGAACCAC^   A -   U           G    C       AUUUGA 
       110       100         90        80        70        60