MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-505-v2

Family name MIR-505 (all species)
Seed GGAGCCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-505
Paralogues Eca-Mir-505-v1 
Orthologues Bta-Mir-505-v2  Cfa-Mir-505-v2  Cja-Mir-505  Cpo-Mir-505-v2  Dno-Mir-505-v2  Ete-Mir-505-v2  Hsa-Mir-505-v2  Laf-Mir-505-v2  Mml-Mir-505-v2  Mmr-Mir-505-v2  Mmu-Mir-505-v2  Ocu-Mir-505-v2  Pab-Mir-505-v2  Rno-Mir-505-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v2)		 Mir-505-v1 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Mir-505-v2 CM009179.1: 115406723-115406781 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGACCGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGCAUCACCAAGUUCGUGGAUUUUC
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Structure
        10           20        30        40        50         
CUGACCGUGGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG  GGUC CUCCUUUGGUC UUCA AACUGCG      C
CUUUUAGGUGCUUGAACCAC^   A-    U           G    C       AUUUGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-505-v2_5p
mirBase accessionNone
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGU -22
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Co-mature sequence

Eca-Mir-505-v2_3p
mirBase accessionMIMAT0013229
Sequence 
37- GUCAACACUUGCUGGUUUCCUC -59
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